SNP Profiles matching PA 72 [PER]

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 Key

 1234567891011121314
_Input profile
GGAAACGTCCACAGCCAAGGAAACCTGT
1._PA_72_[PER]
GGAAACGTCCACAGCCAAGGAAACCTGT
2._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
3._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
4._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
5._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
6._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
7._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
8._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
9._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
10._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
11._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
12._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
13._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
14._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
15._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
16._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
17._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
18._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
19._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
20._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
21._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
22._PA_41_[PER]
GGAAACGTCCACAGCCAAGGAGACCTGT
23._RUQ_32
GGAACCGGCCACAGCCAAGGAAACCTGT
24._PA_56_[PER]
GGAACCGGCCACAGCCAAGGAAACCTGT
25._RUQ_1569
__ACGGCCAAAGCCAA_AAACCTGT
26._RUQ_32
__CCGGCCACAGCCAA_AAACCTGT
27._RUQ_1564
__ACGGCCAAAGCCAA_AAACCTGT
28._RUQ_1092
__ACGGCTACAGCCAA_AAACCTGG
29._PA_32_[PER]
GGAAACGTCCACGGCCAAGGAAACCTGT
30._MO_9
GGAAACGTCCACAACCAAGGAACCCTGT
31._MO_9
GGAAACGTCC_AACCAAGGAACCCTGT
 1516171819202122232425262728
_Input profile
CGCCTTAATTGGCCCCCTGGAACTAGCC
1._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
2._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
3._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
4._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
5._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
6._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
7._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
8._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
9._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
10._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
11._PA_72_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
12._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
13._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
14._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
15._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
16._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
17._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
18._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
19._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
20._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
21._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
22._PA_41_[PER]
CGCCTTAATTGGCCCCCCGGAACTAGCC
23._RUQ_32
CGCCTTAA_GG_CCCTGGAACTAGCC
24._PA_56_[PER]
CGCCTTAA_GG_CCCTGGAACTAGCC
25._RUQ_1569
CGCCTT__GGCCCC____AGCC
26._RUQ_32
CGCCTT__GGCCCC____AGCC
27._RUQ_1564
CGCCTT__GGCCCC____AGCC
28._RUQ_1092
CGCCTT__GGCCCC____AGCC
29._PA_32_[PER]
CGCCTTAATTGGCCCCCCCGAACTAACC
30._MO_9
GGCCTTAA_GG_CCCTCGAACTAGCC
31._MO_9
GGCCTTAA_GG_CCCTCGAACTAGCC
 293031323334353637383940  
_Input profile
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
1._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
2._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
3._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
4._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
5._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
6._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
7._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
8._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
9._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
10._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
11._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
12._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
13._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
14._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
15._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
16._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
17._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
18._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
19._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
20._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
21._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
22._PA_41_[PER]
GGAACCCCTTCTACTTCCGGAGCCX_XX_X
23._RUQ_32
GGAACCCCTTCCACTTCTCGGGCCX_XX_X
24._PA_56_[PER]
GGAACCCCTTCCACTTCTCGGGCCX_XX_X
25._RUQ_1569
____TT___CCCGAG_X_XX_X
26._RUQ_32
____TT___CTCGGG_X_XX_X
27._RUQ_1564
____TT___CCCGAG_X_XX_X
28._RUQ_1092
____TT___CTGGGG_X_XX_X
29._PA_32_[PER]
AGAACCCCTTCTACTTCTGGAGCCX_XX_X
30._MO_9
GGAACCCCTTCCACTTCTCGGGCCX_XX_X
31._MO_9
GGAACCCCTTCCACTTCTCGGGCCX_XX_X

Input profile: PA_72_[PER]

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

1._PA_72_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

2._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

4._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

5._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

6._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

7._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

8._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

9._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

10._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

11._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

21._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._PA_41_[PER]

93.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 667
 Dapeng Zhang, 2014

23._PA_56_[PER] RUQ_32

93.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._PA_56_[PER]

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

25._CRUZ_7_/14 RUQ_1569

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._PA_56_[PER] RUQ_32

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._PA_71_[PER] RUQ_1564

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._SLA_16 RUQ_1092

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._PA_32_[PER]

91.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 253
 Dapeng Zhang, 2014

30._MO_9

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

31._MO_9

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP836 20TcSNP872
21TcSNP878 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520